PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000275-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 260aa    MW: 28081.3 Da    PI: 5.8014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000275-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035108130123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  NNU_000275-RA 108 FSCNYCQRKFFSSQALGGHQNAH 130
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-6106135No hitNo description
PROSITE profilePS5015711.344108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKASNSEFEA EVLSEDESDI SSQVASNIYG HGTTPDPSKD TTNPSSCLTN PMKLQPNPRL  60
LSLDLSLSLK NSDADLGGME SVELSLSSTT ECSSKAAAHT PATFPRVFSC NYCQRKFFSS  120
QALGGHQNAH KRERTLAKRA MRMGVFSERY SSLASLPLHG SACRSLGVQA HSSVHHSLAA  180
RENLPEMRSV ARFEHGYFGP PVFMEDDEAE LFWPGSFRQV PEGVGGYPGF ELAGSSPLNI  240
VTVASVPEAD SSPPDLTLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279648.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392631e-52ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A061EDS86e-98A0A061EDS8_THECC; Zinc finger protein 4
STRINGPOPTR_0008s13730.12e-93(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-53zinc finger protein 4